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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.

Pages

Posts

First blog post

1 minute read

Published:

I just got my first PhD paper published, which includes the publication of my first software. So I thought it was time to make my own site to organize these and future work. Read more

publications

Pathway Analysis: State of the Art

Published in Frontiers in Physiology, 2015

This review’s aim is to give an overview of what pathway analysis is and how different methods have developed encompassing the same idea of trying to identify biologically meaningful categories that are relevant for the results obtained from Omics experimental data. Read more

Recommended citation: García-Campos, M.A., Espinal-Enríquez, J. and Hernández-Lemus, E., 2015. Pathway analysis: state of the art. Frontiers in physiology, 6, p.383. https://www.frontiersin.org/articles/10.3389/fphys.2015.00383

Deciphering the m6A code via quantitative profiling of m6A at single-nucleotide resolution

Published in bioRxiv, 2019

In this preprint we present a method to quantify m6a using a m6a sensitive endonuclease, and uncover the mechanistic behaviour of methylation trough a simple and conserved code in cis. Read more

Recommended citation: Garcia-Campos, M.A., Edelheit, S., Toth, U., Shachar, R., Nir, R., Lasman, L., Brandis, A., Hanna, J.H., Rossmanith, W. and Schwartz, S., 2019. Deciphering the "m6A code" via quantitative profiling of m6A at single-nucleotide resolution. BioRxiv, p.571679. https://www.biorxiv.org/content/10.1101/571679v1

Deciphering the “m6A Code” via Antibody-Independent Quantitative Profiling

Published in Cell, 2019

In this paper we present a method to quantify m6a using an m6a sensitive endonuclease, and uncover the mechanistic behaviour of methylation trough a simple and conserved code in cis.


Read more

Recommended citation: Garcia-Campos, M. A. et al. (2019) ‘Deciphering the “m6A Code” via Antibody-Independent Quantitative Profiling’, Cell. Elsevier, 0(0). doi: 10.1016/j.cell.2019.06.013. https://www.cell.com/cell/fulltext/S0092-8674(19)30676-2

Tolerance to Oxidative Stress in Budding Yeast by Heterologous Expression of Catalases A and T from Debaryomyces hansenii

Published in Current Microbiology, 2020

In this study we show the recovery and enhancement of the budding yeast’s resistance to oxidative stress by expressing ortholog catalase genes from D. hansenii, a sea yeast.


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Recommended citation: González, J., Castillo, R., García-Campos, M. A., Noriega-Samaniego, D., Escobar-Sánchez, V., Romero-Aguilar, L., ... & Segal-Kischinevzky, C. (2020). Tolerance to Oxidative Stress in Budding Yeast by Heterologous Expression of Catalases A and T from Debaryomyces hansenii. Current Microbiology, 77(12), 4000-4015. https://link.springer.com/article/10.1007/s00284-020-02237-3

software

MAZTER-MINE

MAZTER-mine is a computational pipeline to analize MAZTER-seq derived data, a methodology that profiles m6A quantitatively across transcriptomes in a single-base manner. Read more

txtools

An R package that processes GenomicAlignments into their transcriptomic versions. Read more

brainSTORM

An R package that processes STORMseq-based data for multiple RNA modifications detection. Read more

talks

teaching