t-test in txDT list — tx_test_ttest • txtools

Apply a t-test per nucleotide position separating by groups over a txDT list. At least 2 samples in each group are needed.

Usage

tx_test_ttest(DTL, cont_var, test_groups, test_na.rm = FALSE, ...)

Arguments

DTL: list. List of txDT, into which each element represents a replicate of an experimental dataset.
cont_var: character. Name of column, specifying the continuous variable to be used in test.
test_groups: factor. Factor specifying the "WT" and "KO" samples.
test_na.rm: logical. Remove NAs from tests
...: For use by rowttests

Value

data.table