Plot metagene by bins — tx_plot_metaGeneByBins • txtools

Plot metagene by bins

Usage

tx_plot_metaGeneByBins(
  txDT,
  colName,
  nBins = 100,
  FUN = "mean",
  minTxLength = 300,
  smooth = TRUE,
  na.rm = TRUE
)

txDT: data.table. A table as output by the tx_makeDT_coverage(), tx_makeDT_nucFreq() or tx_makeDT_covNucFreq() functions.
colName: character. Name of the column of numeric (or logical) class to be plot
nBins: integer. Number of bins to divide each gene on
FUN: character. Function to be used to summarize values across bins and genes.
minTxLength: integer. Minimum transcript length to be included in analysis.
smooth: logical. Set to FALSE for not smoothing line.
na.rm: logical. Remove NA values from computations, by default is TRUE.

ggplot