Get transcriptome sequences
tx_get_transcriptSeqs.Rd
Get transcriptome sequences
Arguments
- genome
list. The full reference genome sequences, as loaded by
tx_load_genome
() or prepackaged by BSgenome, see ?BSgenome::available.genomes- geneAnnot
GRanges. Gene annotation as loaded by
tx_load_bed
().- outFile
character. If specified, sequences will be written to this file name. Otherwise a character vector will be output
- nCores
integer. Number of cores to run the function with. Multi-core capability not available in Windows OS.