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Get transcriptome sequences

Usage

tx_get_transcriptSeqs(genome, geneAnnot, outFile = NULL, nCores = 1)

Arguments

genome

list. The full reference genome sequences, as loaded by tx_load_genome() or prepackaged by BSgenome, see ?BSgenome::available.genomes

geneAnnot

GRanges. Gene annotation as loaded by tx_load_bed().

outFile

character. If specified, sequences will be written to this file name. Otherwise a character vector will be output

nCores

integer. Number of cores to run the function with. Multi-core capability not available in Windows OS.

Value

character