Get metagene by exons — tx_get_metageneExons • txtools

Get metagene by exons

Usage

tx_get_metageneExons(
  txDT,
  colVars,
  nBins,
  geneAnnot = NULL,
  rm_NArows = TRUE,
  nCores = 1
)

txDT: data.table. A table as output by the tx_makeDT_coverage(), tx_makeDT_nucFreq() or tx_makeDT_covNucFreq() functions.
colVars: character. Names of columns for which values will be extracted
nBins: integer. Number of bins into which exon data will be allocated.
geneAnnot: GRanges. Gene annotation as loaded by tx_load_bed().
rm_NArows: logical. Remove rows of final matrix which consist of all NA values.
nCores: integer. Number of cores to run the function with. Multicore capability not available in Windows OS.

list of matrices for each colVar