Add counts of nucleotide reads different to the reference sequence

Add a column to a txDT of the sum of nucleotide frequency different to the reference sequence, counting deletions, without considering 'N's nor inserts '.' into the calculation.

Usage

tx_add_misincCount(DT)

Arguments

DT

data.table. A table as output by the tx_makeDT_nucFreq() or tx_makeDT_covNucFreq() functions.

Value

data.table