Add exon place

Adds a column specifying if the exon is the first, intermediate, or last exon

Usage

tx_add_exonPlace(txDT, geneAnnot, nCores = 1)

Arguments

txDT

data.table. A table as output by the tx_makeDT_coverage(), tx_makeDT_nucFreq() or tx_makeDT_covNucFreq() functions.

geneAnnot

GRanges. Gene annotation as loaded by tx_load_bed().

nCores

integer. Number of cores to run the function with. Multicore capability is not available in Windows OS.

Value

data.table