Add number of nucleotide reads different to the reference genome

tx_add_diffNucToRef() was renamed to tx_add_misincCount()

Add a column to DT of the sum of nucleotide frequency different to the reference sequence counting deletions, without considering 'N's nor inserts '.' into the calculation.

Usage

tx_add_diffNucToRef(DT)

Arguments

DT

data.table. A data.table object. See tx_makeDT_coverage, tx_makeDT_nucFreq or tx_makeDT_covNucFreq functions.

Value

data.table