Plot an extracted metaGeneMatrix
hlp_plot_metageneRegions.RdIt plots an extracted metagene matrix from tx_get_metageneRegions(). Useful when modifying the metagene matrix, like filtering genes out.
Usage
hlp_plot_metageneRegions(
metaGeneMatrix,
colVars,
nBins_5UTR,
nBins_CDS,
nBins_3UTR,
summ_fun = "mean",
smooth = TRUE,
spar = 0.5,
plot_type = "lineplot",
normalize = FALSE
)Arguments
- metaGeneMatrix
matrix. As obtained by
tx_get_metageneRegions()- colVars
character. Names of columns for which values will be extracted
- nBins_5UTR
integer. Number of bins into which allocate data on 5'UTR regions
- nBins_CDS
integer. Number of bins into which allocate data on CDS regions
- nBins_3UTR
integer. Number of bins into which allocate data on 3'UTR regions
- summ_fun
character. Summarizing function either "sum" or "mean". Default: "mean"
- smooth
logical. Set to FALSE for not smoothing line.
- spar
numeric. Smoothing parameter, typically (but not necessarily) in (0,1].
- plot_type
character. Type of plot to be output, either "lineplot" or "boxplot".
- normalize
logical. If set to TRUE, values are normalized so that the area bellow the curve approximates to 1 for each variable.