IUPAC code extended to consider deletions

The IUPAC_CODE_MAP_extended named character vector contains the mapping from the IUPAC nucleotide ambiguity codes to their meaning adding the deletion code "-", this is required for computing the consensus strings between overlapping reads.

Usage

IUPAC_CODE_MAP_extended

Format

Named character vector

Source

Adapted from Biostrings object IUPAC_CODE_MAP